Calling Taverna Workflows from iPython Notebook
The tavernaPlayerClient package, currently at version 0.06 can be installed from PyPi. For example, using
pip install tavernaPlayerClient
The Client allows you to connect to a Taverna Player and to select and run workflows. You can use data from the iPython Notebook as inputs to the workflow run, and use the results of the run in later cells in your notebook.
A demonstration video as at http://youtu.be/QVQwSOX5S08
An example notebook is available at http://tinyurl.com/neoflwy
A more complex example showing the chaining of workflows is at http://tinyurl.com/ncw9ces
This work was done with the help of Youri Lammers from Naturalis in the Netherlands and Ross Mounce from the University of Bath, UK and was partially carried out at the pro-iBiosphere Data Enrichment Hackathon – http://www.pro-ibiosphere.eu/
For more information, comments or questions, please contact support@mygrid.org.uk